Index

A

A (cmdtools.estimation.sqra.SQRA attribute) AbstractDiffusion (class in cmdtools.systems.diffusion)

adjacency_nd() (in module cmdtools.estimation.sqra) assertstructure() (in module cmdtools.analysis.optimization)

B

Basis (class in cmdtools.estimation.galerkin)

beta_to_epsilon() (in module cmdtools.estimation.sqra)

C

cmdtools module cmdtools.analysis module cmdtools.analysis.optimization module cmdtools.analysis.pcca module cmdtools.estimation module

cmdtools.estimation.galerkin module cmdtools.estimation.sqra module cmdtools.systems module cmdtools.systems.diffusion module cmdtools.utils module

D

DoubleWell (class in cmdtools.systems.diffusion)

E

euclidean_torus() (in module cmdtools.utils)

example_metastab4() (in module cmdtools.utils)

F

fillA() (in module cmdtools.analysis.optimization)

find_bandwidth() (in module cmdtools.estimation.galerkin)

G

Gaussian (class in cmdtools.estimation.galerkin)

get_pi() (in module cmdtools.utils) gramschmidt() (in module cmdtools.analysis.pcca)

I

indexsearch() (in module cmdtools.analysis.optimization) inner_simplex_algorithm() (in module cmdtools.analysis.optimization)

is_generator() (in module cmdtools.utils) is_rowstochastic() (in module cmdtools.utils)

K

koopman() (cmdtools.estimation.galerkin.TransferOperatorGalerkin method)

M

mass() (cmdtools.estimation.galerkin.TransferOperatorGalerkin method) massmatrix() (in module cmdtools.estimation.galerkin) membership() (in module cmdtools.estimation.galerkin) module cmdtools cmdtools.analysis cmdtools.analysis.optimization cmdtools.analysis.pcca cmdtools.estimation cmdtools.estimation.galerkin cmdtools.estimation.sqra cmdtools.systems cmdtools.systems.diffusion cmdtools.utils

O

objective() (in module cmdtools.analysis.optimization) optimize() (in module cmdtools.analysis.optimization)

Optimizer (class in cmdtools.analysis.optimization) order_membership() (in module cmdtools.utils)

P

PCCA (class in cmdtools.analysis.pcca) pcca() (in module cmdtools.analysis.pcca) perronfrobenius() (cmdtools.estimation.galerkin.TransferOperatorGalerkin method)

potential() (cmdtools.systems.diffusion.DoubleWell method) (cmdtools.systems.diffusion.TripleWell method) propagator (cmdtools.estimation.galerkin.Gaussian property) propagator() (in module cmdtools.estimation.galerkin)

Q

Q (cmdtools.estimation.sqra.SQRA attribute)

R

randompropagator() (in module cmdtools.utils)

rowstochastic() (in module cmdtools.utils)

S

solve() (cmdtools.analysis.optimization.Optimizer method) (cmdtools.analysis.pcca.PCCA method) sqdist() (in module cmdtools.estimation.galerkin)

SQRA (class in cmdtools.estimation.sqra) sqra() (cmdtools.estimation.sqra.SQRA method) (in module cmdtools.estimation.sqra) stiffness() (cmdtools.estimation.galerkin.TransferOperatorGalerkin method)

T

torus_minus() (in module cmdtools.utils)

TransferOperatorGalerkin (class in cmdtools.estimation.galerkin) TripleWell (class in cmdtools.systems.diffusion)