Index

A

assertstructure() (in module cmdtools.analysis.optimization)

B

Basis (class in cmdtools.estimation.galerkin)

beta() (cmdtools.systems.diffusion.DiffusionProcess property) beta_to_epsilon() (in module cmdtools.systems.diffusion)

C

cmdtools module cmdtools.analysis module cmdtools.analysis.optimization module cmdtools.analysis.pcca module cmdtools.estimation module

cmdtools.estimation.galerkin module cmdtools.estimation.sqra module cmdtools.systems module cmdtools.systems.diffusion module cmdtools.utils module

D

DiffusionProcess (class in cmdtools.systems.diffusion) dimension (cmdtools.systems.diffusion.DoubleWell attribute) (cmdtools.systems.diffusion.ThreeHolePotential attribute)

DoubleWell (class in cmdtools.systems.diffusion)

E

example_metastab4() (in module cmdtools.utils)

F

fillA() (in module cmdtools.analysis.optimization)

find_bandwidth() (in module cmdtools.estimation.galerkin)

G

Gaussian (class in cmdtools.estimation.galerkin)

get_pi() (in module cmdtools.utils) gramschmidt() (in module cmdtools.analysis.pcca)

I

indexsearch() (in module cmdtools.analysis.optimization)

inner_simplex_algorithm() (in module cmdtools.analysis.optimization) is_rowstochastic() (in module cmdtools.utils)

K

koopman() (cmdtools.estimation.galerkin.TransferOperatorGalerkin method)

KrylovSchur (class in cmdtools.analysis.pcca) krylovschur() (in module cmdtools.analysis.pcca)

M

mass() (cmdtools.estimation.galerkin.TransferOperatorGalerkin method) massmatrix() (in module cmdtools.estimation.galerkin) membership() (in module cmdtools.estimation.galerkin) module cmdtools cmdtools.analysis cmdtools.analysis.optimization cmdtools.analysis.pcca cmdtools.estimation cmdtools.estimation.galerkin cmdtools.estimation.sqra cmdtools.systems cmdtools.systems.diffusion cmdtools.utils

O

objective() (in module cmdtools.analysis.optimization) optimize() (in module cmdtools.analysis.optimization)

Optimizer (class in cmdtools.analysis.optimization) order_membership() (in module cmdtools.utils)

P

PCCA (class in cmdtools.analysis.pcca) pcca() (in module cmdtools.analysis.pcca) perronfrobenius() (cmdtools.estimation.galerkin.TransferOperatorGalerkin method)

petsc_matrix() (in module cmdtools.analysis.pcca) propagator() (cmdtools.estimation.galerkin.Gaussian property) (in module cmdtools.estimation.galerkin)

R

randompropagator() (in module cmdtools.utils)

rowstochastic() (in module cmdtools.utils)

S

ScipySchur (class in cmdtools.analysis.pcca) scipyschur() (in module cmdtools.analysis.pcca) solve() (cmdtools.analysis.optimization.Optimizer method) (cmdtools.analysis.pcca.KrylovSchur method) (cmdtools.analysis.pcca.PCCA method) (cmdtools.analysis.pcca.ScipySchur method)

sqdist() (in module cmdtools.estimation.galerkin) sqra() (in module cmdtools.estimation.sqra) stationary_dist_nn() (cmdtools.systems.diffusion.DiffusionProcess method) stiffness() (cmdtools.estimation.galerkin.TransferOperatorGalerkin method)

T

ThreeHolePotential (class in cmdtools.systems.diffusion)

TransferOperatorGalerkin (class in cmdtools.estimation.galerkin)

X

xmax (cmdtools.systems.diffusion.DoubleWell attribute) (cmdtools.systems.diffusion.ThreeHolePotential attribute)

xmin (cmdtools.systems.diffusion.DoubleWell attribute) (cmdtools.systems.diffusion.ThreeHolePotential attribute)

Y

ymax (cmdtools.systems.diffusion.ThreeHolePotential attribute)

ymin (cmdtools.systems.diffusion.ThreeHolePotential attribute)